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Pandas: Issue with merging DataFrames based on index and multiple columns, resulting in unexpected NaN values

👀 Views: 1961 đŸ’Ŧ Answers: 1 📅 Created: 2025-06-12
pandas dataframe merge Python

I'm encountering an issue while trying to merge two DataFrames in pandas based on the index and additional columns..... I have two DataFrames, `df1` and `df2`, and I want to merge them based on their indexes as well as a common column named `key`. However, the resulting DataFrame contains unexpected NaN values in several rows after the merge, and I'm unsure why this is happening. Here's a snippet of my code: ```python import pandas as pd # Creating the first DataFrame index1 = pd.date_range('2023-01-01', periods=5) df1 = pd.DataFrame({ 'key': ['A', 'B', 'C', 'D', 'E'], 'value1': [10, 20, 30, 40, 50] }, index=index1) # Creating the second DataFrame index2 = pd.date_range('2023-01-02', periods=5) df2 = pd.DataFrame({ 'key': ['B', 'C', 'D', 'F', 'G'], 'value2': [100, 200, 300, 400, 500] }, index=index2) # Merging based on index and 'key' column merged_df = pd.merge(df1, df2, how='outer', left_index=True, right_index=True, suffixes=('_left', '_right')) print(merged_df) ``` When I execute this code, I see the following output: ``` key_left value1 key_right value2 2023-01-01 A 10 NaN NaN 2023-01-02 B 20 100.0 100.0 2023-01-03 C 30 200.0 200.0 2023-01-04 D 40 300.0 300.0 2023-01-05 E 50 NaN NaN 2023-01-06 NaN NaN F 400.0 2023-01-07 NaN NaN G 500.0 ``` The NaN values appear in the rows where the date indexes don't match, but I expected the merge to handle that based on the 'key' column as well. I tried using both `how='outer'` and `how='inner'`, but the NaNs still persist in the merged DataFrame. Additionally, I have confirmed that the `key` values in `df1` and `df2` do overlap, so I'm puzzled as to why the merge isn't functioning as intended. I'm using pandas version 1.5.3, and I would appreciate any guidance or suggestions on how to resolve this issue. Is there a different approach I should consider for merging these DataFrames correctly without resulting in NaNs? My development environment is Windows 10. Hoping someone can shed some light on this.